@inproceedings {Simula.simula.1970,
	title = {Performance of Sediment Transport Simulations on NVIDIA{\textquoteright}s Kepler Architecture},
	journal = {The International Conference on Computational Science, ICCS 2013},
	volume = {18},
	year = {2013},
	pages = {1275-1281},
	publisher = {Elsevier},
	type = {Conference},
	keywords = {Conference},
	doi = {10.1016/j.procs.2013.05.294},
	author = {Su, Huayou and Wu, Nan and Wen, Mei and Zhang, Chunyuan and Cai, Xing},
	editor = {Alexandrov, Vassil and Lees, Michael and Krzhizhanovskaya, Valeria and Dongarra, Jack and Peter M.A. {Sloot}}
}
@inproceedings {Simula.simula.1518,
	title = {A New Parallel 3D Front Propagation Algorithm for Fast Simulation of Geological Folds},
	journal = {The International Conference on Computational Science, ICCS 2012},
	volume = {9},
	year = {2012},
	pages = {947-955},
	publisher = {ICCS},
	type = {Conference},
	address = {Amsterdam},
	abstract = {We present a novel method for 3D anisotropic front propagation and apply it to the simulation of geological folding. The new iterative algorithm has a simple structure and abundant parallelism, and is easily adapted to multithreaded architectures using OpenMP. Moreover, we have used the automated C-to-CUDA source code translator, Mint, to achieve greatly enhanced computing speed on GPUs. Both OpenMP and CUDA implementations have been tested and benchmarked on several examples of 3D geological folding.},
	keywords = {Conference},
	doi = {10.1016/j.procs.2012.04.101},
	author = {Gillberg, Tor and Sourouri, Mohammed and Cai, Xing},
	editor = {Ali, Hesham and Shi, Yong and Khazanchi, Deepak and Lees, Michael and van Albada, Dick and Dongarra, Jack and Peter M.A. {Sloot} and Dongarra, Jack}
}
@inproceedings {Simula.sc.1168,
	title = {Bioinformatics{\textquoteright} Challenges to Computer Science},
	journal = {Proceedings of the 8th international conference on Computational Science, Part III},
	year = {2008},
	pages = {67-69},
	publisher = {Springer},
	type = {Conference},
	isbn = {978-3-540-69383-3},
	doi = {10.1007/978-3-540-69389-5\_9},
	author = {Cannataro, Mario and Romberg, Mathilde and Rodrigo Weber dos {Santos} and Sundnes, Joakim},
	editor = {Bubak, Marian and Geert Dick {van Albada} and Dongarra, Jack and Peter M.A. {Sloot}}
}
@inproceedings {Reinemo.2005.1,
	title = {Ethernet As a Lossless Deadlock Free System Area Network},
	journal = {Proceedings of the International Symposium on Parallel and Distributed Processing and Applications, Nanjing, China May 2-5},
	year = {2005},
	month = {november},
	pages = {901-914},
	publisher = {Springer-Verlag GmbH},
	type = {Conference},
	address = {Heidelberg, Germany},
	abstract = {The way conventional Ethernet is used today differs in two aspects from how dedicated system area networks are used. Firstly, dedicated system area networks are lossless and only drop frames when bit errors occur, while conventional Ethernet drop frames whenever congestion occur. Secondly, these networks are either deadlock free or use mechanisms which avoids deadlock situations, while still using all available links. Ethernet avoids deadlocks by using a spanning tree protocol which turns any topology into a tree. A drawback of this approach is that we are left with a lot of unused links and thus wasting resources. In this paper we describe how to obtain a lossless deadlock free network with the best possible performance, while adhering to the current Ethernet standard and using off-the-shelf Ethernet equipment. We achieve this by introducing flow control in all network nodes and by taking control over the routing algorithm. Also, we use TCP to illustrate the effect of flow control on higher layer protocols. Through simulations we verify the following tree improvements. Firstly, the activation of flow control turns Ethernet into a lossless network. Secondly, taking control over the routing algorithm allows us to build any topology without the limitations of the spanning tree protocol. And thirdly, an overall improvement in throughput is achieved by combining these enhancements.},
	isbn = {3-540-29769-3},
	author = {Reinemo, Sven-Arne and Skeie, Tor},
	editor = {Pan, Yi and Chen, Daoxu and Guo, Minyi and Cao, Jiannon and Dongarra, Jack}
}
