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"TCRPower: Quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences." Briefings in Bioinformatics 23, no. 2 (2022): bbab566.
"The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires." Nature Machine Intelligence 3 (2021): 936-944.
"Ten simple rules for quick and dirty scientific programming." PLOS Computational Biology 17, no. 3 (2021): e1008549.